SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
The Docker image is available at&n...sp;https://hub.docker.com/r/biodatageeks/. Supplementary informat...king procedure as well as test data are publicly accessible at th...umentation site http://biodatageeks.org/sequila/benchmarking...ject home page: http://biodatageeks.org/sequila/ • Sou...1666 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because of their capabilities in handling randomness and uncertainty of data noise and in generalization....1650 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on...f gene fusion and fission events, or of gene order along chromosomes, for large data sets including dozens of whol...1647 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the...1647 days ago
heatmaply: popular graphical method for visualizing high-dimensional data
This work is based on ggplot2 and plotly.js engine. It produces similar heatmaps as d3heatmap, with the advantage of speed (plotly.js is able to handle larger size mat...1639 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sen...es (recommended amount - 40 since we estimate variances from the data). By "cohort" we mean samples...1634 days ago
De novo Genome Assembly for Illumina Data
Written and maintained by Simon Gladman - Melbourne Bioinformatics (formerly VLSCI) Protocol Overview / Introduction In this protocol we discuss and outline the proc...1630 days ago
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modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning pre...explanations. Tools for model exploration unite with tools for EDA (Exploratory Data Analysis) to give a broad ove...1628 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genom...1627 days ago