VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files....lternatively, if your scientific question is focused on only one aspect of the data (e....2100 days ago
2100 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory-efficient solution to cluster...sults. Based on simulation and a real guppy RAD-seq data, we show that Rainbow is more...petent than the other tools in dealing with RAD-seq data2085 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module...nerates annotations for each gene based on multiple databases about pathways, diseases..., it can accept either gene list or gene expression data as...2085 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...ovel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic bloc...corporates an efficient algorithm that identifies CSBs in large genomic datasets. The discovered CSBs are rank...2080 days ago
2080 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment o..., exon-capture, and targeted capture data, it...2079 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow easy manipulation and visualization of variant call format (VCF) data. Functions are provided to ra...from and write to VCF files. Once VCF data is read into R a parser funct...ions provide visualization of genomic data. On...2079 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2079 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each...sembly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/ref...2069 days ago