SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with...groups for visualisation and analysis Visualisation of mapped regi...etween data sets Statistical analysis of data to find regions of interest Crea...2124 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User I...mmand-line interface to facilitate the quality control of alignment sequencing data and...2124 days ago
2118 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps thro...riety of heat maps for many different data types and applications. Heatm...o interactively explore their numeric data val...2104 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_q...ay to get it is to produce way too many assemblies on a good RNA data set, with several methods and several parameter settings.2104 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete...2103 days ago
VariantBam: Filtering and profiling of next-generational sequencing data using region-specific rules
VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files....lternatively, if your scientific question is focused on only one aspect of the data (e....2101 days ago
2101 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high...2086 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Rainbow is developed to provide an ultra-fast and memory-efficient solution to cluster...sults. Based on simulation and a real guppy RAD-seq data, we show that Rainbow is more...petent than the other tools in dealing with RAD-seq data2086 days ago