CBS Comparative Microbial Genomics group - BioTools download page
...ce codes for all programs are provided under GNU license, which makes it possible to transfer the programs...raphical analyses of DNA structures. Paper: http://journals.plos.org/plosone/article?id=10.137...2146 days ago
Indexcov: fast coverage quality control for whole-genome sequencing
...cov, an efficient estimator of whole-genome sequencing coverage to rapidly identify samples with aberrant coverage profiles, reveal large-scale chromosomal anomalies, recognize pote...2140 days ago
STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.2139 days ago
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LoRMA: A tool for correcting sequencing errors in long reads
...eads are further polished using long-distance dependencies that are found using multiple alignments. According to our experiments, the proposed method is the most accurate one relying on long...2131 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...air-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could u...stance, PEP_scaffolder ) for scaffolding genome sequences. The most important feature of this me...2131 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
...in molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to tra...he method and make it applicable to various protein seqences, including those without experimental structu...2128 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...s written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are...2127 days ago
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