1583 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JG...zing and analyzing JGI-sequenced plant genomes, as well as selected genomes and datase...1573 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantification of bottom-up proteomics data. It is designed to be user-fr...tegories of experiments: Targeted Database Searches: Exper...teractions. Reference protein sequence databa...1572 days ago
1522 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in databases such as DrugBank and STITCH. These data usually reflect observed interactions, while the l...y target proteins other than those known in public databa...1558 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metag...s steps in metagenomic analysis workflows including data pre-processing, metagenome as...ics solutions. This will maximize the transparency, data p...1550 days ago
1547 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and...rom GenBank Rel.123. The aim of this data set is to give standardized m...h, G+C content, presence of not AGCT data (nucleotide scan check)). Sta...65+74), including insufficient data (...1486 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA databa...1515 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS incl...end assembler, as well as a structural variation caller for Illumina sequencing data....1512 days ago