ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-b...uantification of bottom-up proteomics data. It is designed to be user-fr...egories of experiments: Targeted Database Searches: Exper...eractions. Reference protein sequence databases are used for targeted se...1569 days ago
1520 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in databases such as DrugBank and STITCH. These data usually reflect observed inte...proteins other than those known in public databases; and many proteins bind...1556 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open s...steps in metagenomic analysis workflows including data pre-processing, metagenome as...cs solutions. This will maximize the transparency, data provenance (i.e., the process...1548 days ago
1545 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron...GenBank Rel.123. The aim of this data set is to give standardized m...+C content, presence of not AGCT data (nucleotide scan check)). Sta...4), including insufficient data (not enough material for a 14...1484 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Th...1512 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic rearr...d assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based...1510 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using...rforms graph-based methods operating on basecalled data, and can be competitive with...1508 days ago
1498 days ago