AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of...2389 days ago
Japanese Multi Omics Reference Panel, jMorp
...noLC-MS. We could measure several thousands of metabolites including the uncharacterized ones, and several hundreds of proteins until now. https://academic.oup.com/nar/advance-arti...2389 days ago
Building Web UIs With Mojolicious Perl
...ble in the perl ecosystem (along with Dancer and Catalyst) and by far my favorite...any other features one needs to build a web application. It's easy to install, ha...d extensions. Libraries for developing Web applications Amon2 Catalyst ...2385 days ago
PASA: Gene Structure Annotation and Analysis
...to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and...2384 days ago
2384 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Ins...2384 days ago
xmatchview: smith-waterman alignment visualization
...) http://www.phrap.org) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive. http://www.bcgsc.ca/platform/bioinfo/software/xma...2383 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparati...nbsp;Analysis and Merging of Scaffold Assemblies, distrib...features: works with any number of scaffold assemblies in de-novo no...on allows to simultaneously work with scaffold assemblies obtained from...2383 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...lso releasing the Rectangle Graph Module (RGM) as the separate code which can be run independently of SPAd...approach in SPAdes, in the future we plan to integrate RGM in SPAdes. RGM can be run with other genome ass...2383 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. Unless...ferences to figures and tables in this readme refer to this paper. Specifically, some of the terminology u...2383 days ago