Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...les users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different spe...s displayed in its genomic context in parallel to the genomic context of...stral genome structure in all the ancestral species within the phylogene...2420 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...within and between genomes is essential for comparative genomics. Various process...ion/deletion and inversion could cause the degeneration of CHSs. Results He...gorous statistical validation, and its friendly graphical interface allows intera...2420 days ago
2419 days ago
2419 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination maki...Here we use Taxoblast, a simple pipeline with a graphical user interface, for the...on multiple blastn searches with short sequence fragments. They revealed a number...2416 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late...long reads to sparse short seeds, and outputs a graph and scaffold structures. Tu...g data to these. https://github.com/Generade-nl/TULIP2416 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset...2416 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...MinION sequencer. It includes a functions to generate a number plots for examinin...However, nanopore sequencing is an emerging and rapidly developing technology. I...re not interested in the quality assement of the raw or event level data, and wan...2416 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...us Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were tested under various operating systems, including Window...2415 days ago
coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2414 days ago