Results for "Genomes Analyses"
Bookmarks
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-fr...thout relying on prior knowledge, but these do not scale to arbitrarily large genomes...2932 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes...
2925 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform....s before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes...
2869 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput seque...default, Kaiju uses either the available complete genomes from NCBI RefSeq or the micro...with a protein database comprising 4821 microbial genomes....
2921 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multi...ome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes....2913 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the followi...ntion that if they are useful and help you in your analyses, then we will be appropriatel...2911 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools fo...across and within a set of sequenced genomes to detect variation. The meth...gle-end reads. A minimum of 20 to 30 genomes are required to get acceptabl...ch as a set of genomes from the 1000 Genomes...
2850 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical maps....dapted for the creation of high-quality, detailed circular maps of organellar genomes...
2871 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely use...oorly assembled scaffold dataset. It is especially useful for newly sequenced genomes...
2858 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSB...BRs (shared by pigs and cattle) were detected using the pig and human genomes...2786 days ago
