Results for "Transcriptome analysis"
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In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the me...opment. Here is the acknowledgements section of our methods paper An analysis and visualization platform fo...2907 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...
2907 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience...2901 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: sam...open-source tool used in next-generation sequence analysis. This primer provides an intr...red towards those new to next-generation sequence analysis. The primer is also designed...
2900 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters...o software that can take full advantage of network theory approaches for the analysis of chromatin interaction data...
2896 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired thro...ogy and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the n...
2894 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARS...2888 days ago
- Microbiome analysis using a single application MEGAN6...d in one application. Taxonomic analysis using the NCBI taxonomy or a...taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ns of sequencing reads. Blast-like analysis can be performed using DIAMON...
2868 days ago
- ...resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for...Training Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis...
2654 days ago
- ...isSplice is not a full-length transcriptome assembler. This means that it...ments meant to facilitate the analysis of the results. The choice of the...ability of a reference genome/transcriptome and on the need to perform a differential analysis, as summarised in the followi...
2846 days ago
