STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.2127 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide...nomic resources, supports biological particulars of model organism frequently used in E...udies and offers a wide range of different adaptive models (selective sweeps, polygenic...2097 days ago
2059 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental desi...ions, treatments, locations and times, can be accounted for in the linear mixed model (LMM). GWASpro is optimized t...2027 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequenci...s a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling metho...1999 days ago
1993 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these...hes this by: Learning locus-specific PCR stutter models using an EM algorithm...uencing data Employing a specialized hidden Markov model to align reads to candidate a...1937 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and t...1864 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome si...1765 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the exp...ation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a...l and global explanations. Tools for model exploration unite with tools...1616 days ago