gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1797 days ago
The Extensive de novo TE Annotator (EDTA)
The EDTA package was designed to filter out false discoveries in raw TE candidates and...a high-quality non-redundant TE library for whole-genome TE annotations. Selection of...ce using a manually curated TE library in the rice genome.1795 days ago
Cactus: a reference-free whole-genome multiple alignment program
Cactus is a reference-free whole-genome multiple alignment program. The principal algorith...ctus uses substantial resources. For primate-sized genomes (3 gigabases each), you shou...s to use approximately 120 CPU-days of compute per genome,...1791 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline design...t is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome...1790 days ago
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LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in r...lving complex genomic regions. As a leading model organism with small genome size and great biotechnologica...1777 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an interactive tool to allow biological exp...ollo was developed to meet this need, enabling curators to inspect genome...1776 days ago
Retrieving Taxonomic Information with R
This vignette will introduce users to the retrieval of taxonomic information with myTAI. The taxonomy()&n...axonomy() function implemented in myTAI can be used to classify genomes...1774 days ago
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