Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an i...rts to refine these approximations by viewing and independently evaluating the data sup...1776 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate...he following features: Good performance. On a MacBook Pro using Arabidopsis data, ps...1715 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explor...1707 days ago
1706 days ago
1684 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interfa...for access to unlimited private notebooks, RNA-seq datasets...1295 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it does not...to clean up assembly errors. It's also very fast and well suited for long-read data. Ho...1678 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements f...s interoperability between various applications and database...1673 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
The Docker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information...marking procedure as well as test data are publicly accessible at th...documentation site http://biodatageeks.org/sequila/benchmarking...Project home page: http://biodatageek...1666 days ago
Machine learning training and courses in bioinformatics !
...s have been successful in analyzing biological data because of their capabilities in handling randomness and uncertainty of data noise and in generalization....and Bayesian networks) for biological sequence analysis and systems biology. Other ma...1650 days ago