SIMBA: a Genome Assembly Project Management System
...lies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequenci...2095 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted...2087 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Sear...NA databases. BLAST is best used for sequence similarity searching, rather...earching. For searches using a query sequence of fewer than twenty residues...d between the database and the query sequence default = 11 default = 3 d...2084 days ago
2083 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basi...ion of a set of regions with other sets of regions, functions defined over the genome o...2083 days ago
Genome sequence-based (sub-)species delineation.
The GGDC web service reports digital DDH for a universal and accurate delineation of prokaryotic (sub-)species w...ferences in genomic G+C content. http://ggdc.dsmz.de/ggdc_background.php# Genome-to-Genome D...2082 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as prot...tions to all the lines Create smart, automatic annotations for genomes,...2082 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparabl...nterface that allow researchers to calculate OrthoANI values between genomes of interest without unfamiliar...2082 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for mul...2082 days ago
2082 days ago