kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2405 days ago
Harvest: a suite of core-genome alignment and visualization tools
...e alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, in...ols Parsnp - Core-genome alignment and analysis Gingr - Interactive visualization of alignme...2404 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...ilarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion in a greedy way...2403 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...ate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format)....see detailed status and logging information; extract fasta sequence files from t...e multiple alignment files (.maf) from leaf and branch nodes from a completed sim...2403 days ago
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Mugsy: multiple whole genome alignment tool
...whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedur...collinear regions, and the segment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugs...2403 days ago
MOSS: A System for Detecting Software Similarity
...tic system for determining the similarity of programs. To date, the main applicat...of Moss has been in detecting plagiarism in programming classes. Since its devel...Java, C#, Python, Visual Basic, Javascript, FORTRAN, ML, Haskell, Lisp, Scheme,...2403 days ago
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