313 days ago
LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoRe...1110 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1049 days ago
1047 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have s...re k-mer graphs efficiently, discard redundant data, and count them efficien...p;computing and searching k-mer-based sketch search databa...1046 days ago
1032 days ago
A guide to machine learning for biologists
We aim to provide readers with a gentle introduction to a few key machine learning techniques, including the most...describe how different techniques may be suited to specific types of biological data,...1026 days ago
1026 days ago
1024 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
PaReBrick. The tool takes a collection of strains represented as a sequence of oriented synteny blocks and a phylogenetic tree as input data....1003 days ago