TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
...0 human TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles, which describe small-scale experimental studies of transcriptional regulations. To e...2390 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false var...in-house commercial solution, with a minimal loss of sensitivity The program with a detailed manual is av...2390 days ago
Japanese Multi Omics Reference Panel, jMorp
...o. Metabolome data were measured by proton NMR and LC-MS, and proteome data were obtained by nanoLC-MS. We could measure several thousands of metabolites including the uncharacterized ones, and several hun...2389 days ago
Building Web UIs With Mojolicious Perl
Mojolicious is one of 3 leading web frameworks available in the perl ecosystem (along with Da...eb application. It's easy to install, has an applciation generator script and many plugins and extensions. Libraries for developing Web applic...2385 days ago
PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic...ol that exploits spliced alignments of expressed transcript sequences to automatic...ssifies all splicing variations supported by the transcript alignments.2385 days ago
2385 days ago
Recovery of complete genomes from metagenomes
...ts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagen...2385 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed...Institute of Singapore (GIS). Ra is in development since 2014...ject aims to ease the usage of Ra by integrating it into a comp...cting and reducing an overlap graph (Ra layout, https://gi...2384 days ago
xmatchview: smith-waterman alignment visualization
...ython and run on linux and windows. They serve as visual tools for analyzing cross_match alignments. Cross_match (Green, P. (1994) http://www.phrap.org) uses an implementation...2384 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of&nb...s a standalone software package and as Python library under the MIT license. Mai...converters creates an extensive report with several comparative quality metrics...2384 days ago