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Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash re...2400 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help studen...derstand key bioinformatics concepts. The current version includes interactive modules for sequence a...2399 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2398 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...le read simulator that captures the technology-specific features of...improvement of nanopore sequencing technology. The first step of Na...alignment-based analysis and generates a set of read profiles servi...at the Genome Sciences Centre website: http://www.bcgsc.ca/platform...2394 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or...nd chromatin loops in the genome. It then generates a physical 3D model which re...2392 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...e number of sequenced diploid genomes have been steadily increasing in the last f...proposed in the pre-NGS era and are not well suited for NGS projects. To address...HP genomes that significantly improves on the state-of-the-art assemblers for HP...2392 days ago