Results for "R"
Bookmarks
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2405 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, r...ation detection, and phylogenetic trees. Tools Parsnp - Core-genome alignme...2404 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of differences between pa...nces. FOGSAA is a fast Global alignment algorithm. It is basically a branch...dy way taking the symbols from the given pair of sequences (protein or nucl...2404 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In...er, eSC also automatically creates statistical summaries of...d see detailed status and logging information; extract fasta sequence...2404 days ago
- Sept. 20, 2017 Version 3.1 released. Major upgrade. Version 3.1 fixes the problems with SNP annotation that arose when NCBI discontinued use...omes section (pages 9-10) in the version 3.1 User Guide. Thanks to...tation feature. All users are encouraged to upgrade to version 3.1...
2404 days ago
Mugsy: multiple whole genome alignment tool
...is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collin...sive multiple alignment strategy from Seqan::TCoffee. Mugsy accep...ast multiple alignment of closely related whole genomes.Bioinform...2404 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To...cation of Moss has been in detecting plagiarism in programming classes. Si...algorithm behind moss is a significant improvement over other cheating de...2403 days ago
- It may take a little while to load all charts. Please be patient. All charts require an Internet connection. These examples are taken from the googleVis demo. You can...s) demo(googleVis) For more details about the charts and further examples see th...
2402 days ago
- Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes ortholog...om reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and...nima package, and a pipeline for their use. Synima has a range...ity figures. Synima is open source and freely available from&n...
2402 days ago
- The guides describe the function, syntax, and typical use-cases of the tools; for a complete list of parameters, run the tool’s...y have a guide, but each has shellscripts with basic usage informat...uides: BBDuk BBMap BBMask BBMerge BBNorm CalcUniqueness Cl...
2401 days ago
