ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantification o...general categories of experiments: Targeted Database Searches: Experimen...pathogen interactions. Reference protein sequence databases...1562 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and...and its Extraction Procedure from a Major Public Database , International Journal of Mo...te Data Set , Nucleic Acids Research, 2003 Annual Database...1476 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database...1505 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DN...grams involves gene calling, mapping of predicted ORFs against the nr protein database,...1502 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database...1486 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site...TSSs based only on RNA-Seq data and merges them with known TSSs from a public database....1415 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. S...bin checking, for retrieving individual genomes The results are stored in a database,...1411 days ago
Updated science-wide author databases of standardized citation indicators
There was great interest in the databases of standardized citation metrics across all scie...any scientists urged us to provide updates of the databases. Accordingly, we have provid...endar year 2019 (Table-S7-singleyr-2019). Updated databases...1320 days ago
OGDRAW - Draw Organelle Genome Maps
OrganellarGenomeDRAW converts annotations in the GenBank or EMBL/ENA format into graphical maps....ar genomes (plastid and mitochondria). Nevertheless, you can upload most database&...997 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one...plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database...913 days ago