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gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: sub...1969 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmot...1967 days ago
- LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and gener...
1967 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...enome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line using VariantBam ru...1959 days ago
HumCFS: a database of fragile sites in human chromosomes
...of chromosdomal breakge when cells are exposed to replicative stress. Since from the discovery of chromosomal fragile sites/regions (CFS), several line of evidence suggests their in...1869 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you can install Gooey by clonin...1676 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1566 days ago
BlobToolKit: A toolkit for genome assembly QC
...ets even for highly fragmented assemblies. BlobTools2 is a command-line program to convert assemblies...d by BlobTools2 and the Viewer. The BlobToolKit Pipeline is a configurable Snakem...1563 days ago
Juicebox: Visualization and analysis software for Hi-C data
...re, or use Juicebox on the web. Detailed documentation is available on the wiki. Instructions below pertain primarily to usage of command line tools and the Juicebox jar fi...1563 days ago
SvABA: Structural variation and indel detection by local assembly
...enome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line using VariantBam ru...1545 days ago
