Results for "and ChIP-seq and RNA-seq analysis"
Bookmarks
LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. U...2194 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the me...nt. Here is the acknowledgements section of our methods paper An analysis and visualization platform for 'omics...
2908 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconduct...ge implements methods to analyze and visualize functional profiles...h contributions from Li-Gen Wang and Giovanni Dall'Olio.Maintainer...To install this package, start R and enter:## try htt...
2908 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experi...to the linuxTutorial folder, and do all the processing inside:...a program that takes your commands from the keyboard and gives them...2902 days ago
- ...; Updated to use samtools 1.1 and bcftools 1.2. &nbs...d in next-generation sequence analysis. This primer provides an introduction to SAMtools, and is geared towards those new to next-generation sequence analysis. The primer is also designed...
2901 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic...h other via chromatin folding and affe...ork theory approaches for the analysis of chromatin interaction...ks with user-provided private and publicly available functional geno...
2897 days ago
- CSBB is a command line based bioinformatics suite...rl, while it also leverages the use of R and python in background for spec...s of CSBB is to allow users from biology and bio...get benefited by performing down-stream analysis tasks while eliminating the n...
2895 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster...tiple sequence alignment. Faster and more accurate than CLUSTALW....PARSE >OTU clustering for 16S and other marker genes. Highly ac...iple alignment benchmarks in a standardized FASTA format.2889 days ago
- ...omy such as SILVA Functional analysis using InterPro2GO, SEED,...ord clouds, Voronoi tree maps and many other charts PCoA, clustering and networks Suppo...sequencing reads. Blast-like analysis can be performed using DIAMON...arge range of analysis tools, and is under active development....
2870 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for...to training modules (webinars and PowerPoint presentations) to...Novo Assembly Transcriptome analysi...nalysis Tools Minor Variants and Phasing Analysis...
2655 days ago
