ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit c...on comparative genomics to capture, query, and visu...bsp;Using Igenbio's proprietary algorithms, and the m...s to genes, integrates genes into pathways, and identifies previously unknown o...2574 days ago
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Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about or...2511 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, al...the field of bioinformatics, and is currently implemented in all free and commercial bioinformatics packages. How...l applicability of BLAST with computat...al efficiency, accessibility, and user...ciently even when only modest computa...2504 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that pla...in the emerging new branch of biology known as functional genomics. The b...des the reader with an understanding of the principles and appro...potential and limitations of computational and experimental approa...2492 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also...rted as an on-line annotation server, and to date,...DFAST, which is also available as a standalone...tomize the annotation workflow easily and will...and 3.4– on Macintosh and Linux systems...2392 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multi...The latter were tested under various operating systems,...ta 32bit, Windows 2008 Server, Windows 7 32bit and 64bit, Ubuntu 10.04 64bit, Ubuntu 10.10 64bit, and gen...2382 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly pr...long reads to optimally order and orient contigs assembled from...res for the assembly of large and complex genomes.Song Gao, Den...red-end sequences. Journal of Computational Biology, Sept. 2011, doi:10.1089/cmb....2379 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct...lyses. We will study the leading computational and quan...e course will focus on human genomics and human...regulation, personal genome analysis, and can...2377 days ago