Finding Patterns in Biological Sequences
...and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern dis...2725 days ago
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2699 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...ased on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational tools that can visualize genome ali...2698 days ago
2685 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...s unavailable. GLOBETROTTER, the admixture dating method based on ChromoPainter. Download from the Downloads page. AdmixturePainting, A set of R tools to inmterpret the results of...2672 days ago
2661 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2658 days ago
splitbam: splits a BAM by chromosomes
...pty BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar...2657 days ago