pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Co...2216 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for lon...2212 days ago
Epiviz: an interactive visualization tool for functional genomics data.
...ns of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It a...p;for transcriptome visualization. It has a flexible plugin framework so users can addd3 visualization...2170 days ago
NanoPack: visualizing and processing long-read sequencing data
...s and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at&n...2138 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
...ickly and easily create interactive plots, dashboards, and data applications. To get started using Bokeh to make your visualizations, see the User Guide. To see examples of ho...2138 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...g system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system can be installed on a virtual computer, allowing the user to run the system alongside a...2126 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality...2106 days ago
FRODOCK 2.0: fast protein–protein docking server
frodock: a user-friendly protein–protein docking server based on an improved version of FRODOCK that includes a complementary knowledge-based potential. The web int...2070 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the disc...2063 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
...for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignme...2029 days ago