HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" w...accuracy across diverse sequencing technologies, including but not limited t...2234 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any liv...advantageous in the scientific interpretations and research work. The package...1902 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
This code is used to scaffold your assemblies us...will need Python 2.7, BOOST libraries and Networ...ing of long read assemblies using long range contact information. BMC genomics, 18...cale assembly. bioRxiv, p.261149 Link For any queries, plea...2203 days ago
SWALO: Scaffolding with assembly likelihood optimization
SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.2198 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided...to mapping based approaches. The software is designed to work in...uations where a whole-genome assembly is not the objective, but rather when t...2162 days ago
2135 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
Rebaler is a program for conducting reference-based assemblies...e task of testing basecallers). It should in principle work for non-bacterial genomes as well, but I haven't tes...2108 days ago
2084 days ago
2060 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix syst...ly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. ht...2051 days ago