GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets o...2987 days ago
2975 days ago
2975 days ago
YASS :: genomic similarity search tool
...xample by iedera). Main features of YASS are: multiple, possibly overlapping seeds and a new hit crite...along triplets, transition/transversion) post-processing step to group gapped alignments...2983 days ago
2972 days ago
2972 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings. Satsuma has paralleliz...2972 days ago
Hagfish - assess an assembly through creative use of coverage plots
...cing data set. Hagfish has more power the larger the insert size of the paired end library is. Quick links: Installation,Operation, Read mappers, Hagfish scripts,&nb...2965 days ago
RCircos: an R package for Circos 2D track plots
...os package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for...2965 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...sitive and open-source program for mapping second and third-generati...nce genome. Uniquely among current mapping tools, MOSAIK can align r...g technologies, including Illumina, Applied Biosystems SOLiD, Roche...thm. This method is well-suited to capture mismatches as well as sho...2965 days ago