Results for "BLAST databases"
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MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and clust...alability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it ac...profile searches with the same sensitivity as PSI-BLAST at...1255 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have...arity measures and computing and searching k-mer-based sketch search databases for all the things. But I ha...1035 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and clust...alability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it ac...profile searches with the same sensitivity as PSI-BLAST at...994 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA +...852 days ago
- ElasticBLAST is a new way to BLAST large numbers of queries...LARGER queries! ElasticBLAST can search query sets that ha...rter time than you could with BLAST+. 3. ElasticBLAST is EASY to...he searches are done. ElasticBLAST also selects the instan...
659 days ago
- Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any software.
625 days ago
- gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.
452 days ago
