Results for "Bioinformatics and Computational Biology"
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...Blaxter Lab, Institute of Evolutionary Biology, University of Edinburgh Goal: To c...genome data for contaminants, symbionts and parasites using taxon-annotat...bmitted 2013-10-01 to Frontiers in Bioinformatics and Computational Biology special issue : Quality asses...2926 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requ...ale to arbitrarily large genomes and arbitrarily large phylogeneti...ical tool for clustering genomic and transcriptomic data with no l...for species level. Availability and Implement...plementary data are available at Bioinfo...2923 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor ver...implements methods to analyze and visualize functional profiles...ontributions from Li-Gen Wang and Giovanni Dall'Olio.Maintainer...install this package, start R and enter:## try http:// if https://...
2923 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequ...cd) to the linuxTutorial folder, and do all the processing inside:...nce-srv2 ~/]$ cp -r /home/opt/MScBioinformatics/linuxTutorial . [...es as it is a language in itself and is used m...is a program that takes your commands fr...2917 days ago
- CSBB is a command line based bioinformatics suite to analyze biol...d in Perl, while it also leverages the use of R and python in background for spec...les. Major focus of CSBB is to allow users from biology and bioinformatics community, to get bene...
2910 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude...>Multiple sequence alignment. Faster and more accurate than CLUSTALW.... UPARSE >OTU clustering for 16S and other mar...ted multiple alignment benchmarks in a standardi...2904 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses....se through different topics. You can copy/paste the commands as they...screen, provided you follow the same naming conventions and fol...2902 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for bo...ks to training modules (webinars and PowerPoint presentations) to...cations. Training Resources: Bioinformatic...a Analysis Tools Minor Variants and Pha...
2670 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModel...e two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and fam...
2860 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hal...ramework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186...
2853 days ago
