2365 days ago
2376 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant ac...T stands for Parallel Local Sequence Alignment Search Tool and is was pub...2374 days ago
Bandage: interactive visualization of de novo genome assemblies
...g nodes, adding labels, changing colors and extracting sequences. BLAST searches can be performed within t...igation of contigs alone. Availability and implementation: Source code and binaries are freely availab...2371 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory rel...dies of transcriptional regulations. To efficiently search for regulatory relationships...ry relationships are known for mode of regulation. Search at : http://www.grnpedia...2354 days ago
2349 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS d...a : 'conda install -c mpi-ie -c bioconda -c conda-forge snakePipes'. Source code (...1829 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the r...ribution, we're also releasing the Rectangle Graph Module (RGM) as the separate code w...2347 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome...2347 days ago
Frontend: Perl Web framework documentation - Andrej Sali Lab
The frontend is a set of Perl classes that displays the web interface, allowing a user to upload their input files, start a job, display a list of all jobs in the syste...2336 days ago