YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces lo...able output filter for low complexity repeats reporting of various alignment stati...2977 days ago
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, a...Grabherr, M. G., Russell, P., Meyer, M., Mauceli, E., Alföldi, J., Di Palma, F., &...2966 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. H...t. Hagfish requires a reference sequence and a paired end re-sequencing data...2958 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos...ack plots with R and could be easily integrated into other R data proces...nes for presenting large-scale multi-sample genomic research data....2959 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation seq...eed, MOSAIK was the only aligner to provide consistent mappings for all the generated data...2958 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of process...s been published in Bioinformatics! If you use Bpipe, please cite: Sadedin S, Pope B &...2957 days ago
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