LIBSVM -- A Library for Support Vector Machines
...SVM classification and regression Python, R, MATLAB, Perl, Ruby, Weka, Common LISP, CLISP, Haskell, OCaml, LabVIEW, and PHP&n...2497 days ago
2491 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...Ubuntu 10.10 64bit, and gentoo AMD64. The corresponding publication can be found here: B. Voss*, M. Hanselmann*, B.Y. Renard, M.S. Lindner, U. Köthe, M. Kirchner, F.A. Hampre...2383 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...S takes fasta format sequences and a file describing the covariance of noise between bases and cycles observed in an actual run of the machine, randomly generates noisy intensities...2379 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe...tworks) and associated data. PhyloXML provides elements for commonl...both due to extensible nature of XML itself and the provision of &...of phyloXML is described by XML Schema Definition (XSD) ...2377 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...evelopped by Clément Goubert, Laurent Modolo and the TREEP team of the LBBE: http://lbbe.univ-lyon1.fr/-Equipe-Elements-transposables-.html?lang=en You can find the...2374 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recom...2369 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolve...2368 days ago
MOSS: A System for Detecting Software Similarity
...ose known to us). Moss can currently analyze code written in the following languages: C, C++, Java, C#, Python, Visual Basic, Javascript, FORTRAN, ML, Haskell, Lisp, Scheme, Pasca...2368 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured b...2350 days ago