Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command l...ine interface is the first experience a user will have of a tool....a tool will be used. Here I present ten recommendations for comm...e, and improve the quality of scientific analyses.3670 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFindin...Aseq Assembly - a Hands on PrimerIntroduction to PERL, Python, R and C/C++...3655 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de no...embly, scaffolding, bacterial RNA-Seq, gene annotation and met...is difficult due to a lack of interoperability, reproducibilit...ex, reproducible workflows for NGS microbiology data analysis....3626 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted g...3636 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (G...3626 days ago
3610 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expe...research labs with access to standard molecular biology and com...ilable for DNA library preparation and sequencing, and inexperie...kflow from the collection of an environmental sample (a swab) to...3608 days ago
Java utilities for Next Generation Sequencing by Pierre Lindenbaum
Java utilities for Bioinformatics https://github.com/lindenb/jvarkit3571 days ago
3566 days ago
International Conference on Bioinformatics Models, Methods and Algorithms
The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together researchers and pra...of computational systems and information technologies to the...ular Paper Authors Notification: November 3, 2014 P...3551 days ago