HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such a...2974 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, fee...2957 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...works by offering a standard software pipeline for identifying genomic fe...eep pace with advancements in bioinformatics, it has become desirabl...es. RASTtk offers a choice of software for identifying and annotatin...ions. This is the first major software restructuring of RAST since i...2973 days ago
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the p...). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinfor...2957 days ago
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Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing st...(Google Group) Bpipe has been published in Bioinformatics! If you use Bpipe, please cit...lack A, Bpipe: A Tool for Running and Managing Bioinfor...2949 days ago