1632 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
You can: improve your Python programming language coding...g popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV. If you have just a single notebook to submit, use the website&nbs...1593 days ago
1585 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data...rce code for Juicebox, Juicer Tools, and Assembly Tools. Dow...s below pertain primarily to usage of command line tools and the Juicebox j...ck out the Juicebox Assembly Tools Module website&nbs...1572 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip:...nda -c conda-forge chromosight or, if you want to get the latest development version: pip3 install --user...1541 days ago
tinycov: standalone command line utility written in python to plot coverage from a BAM file
Tinycov is a small standalone command line utility written in python to plot the coverage of a BAM file qui...the stable version: pip3 install --user tinycov To install the development version: git clone https://g...1541 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions...ses such as DrugBank and STITCH. These data usual...nt studies, both computational and experimental, highlighted the...ose known in public databases; and many proteins bind chemicals...hose known, opening the way to design repu...1532 days ago
gggenes: a ggplot2 extension for drawing gene arrow maps.
Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes1470 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of meta...data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics...enomics, statistical analysis and results visualization with a...ch showed to be both accurate and fast [Wescott 2015].The stati...].SHAMAN is compatible with standard form...1394 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a use...diverse sequence, structure, and binding space of an antibody-ant...of project types, from denovo design to redesigns that improve...gorous bioinformatic analysis and rooted very much on our ...1360 days ago