Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a...he last time a tool will be used. Here I present ten recommendation...ove the uptake and usability of their products, waste less user&rsq...3671 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq As...3655 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de...vo assembly, scaffolding, bacterial RNA-Seq, gene annotation a...difficult due to a lack of interoperability, reproducibility,...plex, reproducible workflows for NGS microbiology data analysi...3626 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of...s involved in any NGS analysis that employs a reference genome, including how...ed, gene annotations, and predicted genetic variants. http://www.broadinstit...3637 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequ...et al. 2014). It is also available for download for non-commercial a...3626 days ago
3611 days ago
Swabs to Genomes: A Comprehensive Workflow
...bly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost triv...rch labs with access to standard molecular biology and comput...and inexperience with bioinformatics can pose a significant...lab or classroom with limited resources and bioinformatics ex...3608 days ago
Java utilities for Next Generation Sequencing by Pierre Lindenbaum
Java utilities for Bioinformatics https://github.com/lindenb/jvarkit3572 days ago
3567 days ago
International Conference on Bioinformatics Models, Methods and Algorithms
The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together res...computational systems and information technologies to the fie...developments in genome bioinformatics and computational biolo...sp;October 9, 2014 Regular Paper Authors Notification:&n...3552 days ago