1994 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...sis of the results. At the end of the lab you will know: How to perform basic quality checks on the input data How to run a short read assembler on Illumina data How to run a long read assembler on Paci...1988 days ago
1985 days ago
DISTRUCT: a program for the graphical display of population structure
...rectory using gunzip filename.tar.gz; tar xvf filename.tar where "filename.tar.gz" is the downloaded file. Winzip will unzip the Windows version. Run the program by typing ./dist...1923 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Tr...1775 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
...Gooey Alternatively, you can install Gooey by cloning the project to your local directory git clone https://github.com/chriskiehl/Gooey.git run setup.py python setup.p...1702 days ago
1628 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Compiler only Cycles enumeration (aka...1614 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...efficient. With a 5 GB memory footprint for 100 million reads, it can be run on virtually any desktop or s...c License from https://github.com/mourisl/Rcorrector/. Usage: perl run_rcorrector.pl [OPTIONS] OPTI...1606 days ago
1600 days ago