Results for "3D Genome"
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Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, all...2897 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite...using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...ts, but the method gains power across genomes and processing more genomes...
2842 days ago
- ...sMap is a program for convenient conversion of genome coordinates (or annotation fi...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...;a program for aligning sequences to reference genome. We do not recomme...
2843 days ago
- ...lar, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the...
2863 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBan...or the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (plastome) or the mitochondri...
2863 days ago
- ...ftware that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcr...choice of the post-treatment depends on the availability of a reference genome/transcriptome and on the need...
2863 days ago
- ...ress has greatly facilitated de novo genome sequencing. However, de...isualization and quality assessment of de novo genome assemblies Citation This so...isualization and quality assessment of de novo genome assemblies. In brief, our sc...
2855 days ago
- ...iscovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi...
2854 days ago
- ...ifferent gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...s will lead to wrong prediction of initial exons in most cases. http://genome.crg.es/courses/Bioinformatics...
2853 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and...tes (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...et. It is especially useful for newly sequenced genomes that have not been well anno...
2850 days ago
