Results for "AP"
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Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference...ose for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that...2965 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2962 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically...4-bit machine. For help on the bigBed and bigWig applications see:http://genome.u...OOTER' to see the usage statement for each of the applications.2963 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2952 days ago
- ...otation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent S...
2951 days ago
- ...genome assembly data sets as a QC step. This repository accompanies the paper:Blobology: exploring raw ge...t contains bash/perl/R scripts for running the analysis presented in the paper to create a preliminary ass...
2941 days ago
- ...or executed individually to generate specific charts and tables. GAEMR standardizes input by converting a variety of read types to Binary Alignment Map (BAM) format, allowing a sing...
2940 days ago
- ...encing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 201...
2224 days ago
CovCal: Coverage / Read Count Calculator
...similar calculator written by James Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N =...2224 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on...2938 days ago
