EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a th...e-step normalization procedure with a novel heterogeneous hidden Markov model algori...1975 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome s...ucts all exact match pairs by a suffix-array based algorithm and extends them to long highly similar pairs. Then Smith-Waterman algori...1966 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supportin...of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depict...1959 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple...gainst a reference coding sequence. For further details about the underlying algori...1931 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likeliho...1931 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes....ishes this by: Learning locus-specific PCR stutter models using an EM algori...1913 days ago
1876 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that...phage genomes. This tool incorporates a de novo phage gene-calling algori...1844 days ago
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.1806 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a com...ptimized for shared-memory CPUs by employing a multi-threaded design, and further parallelized for...1789 days ago