Results for "Genome Interpretation"
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Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing eith...2905 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for...on using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...ults, but the method gains power across genomes and pr...
2850 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between&nbs...F/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...a program for aligning sequences to reference genome. We&nb...
2851 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other s...by mate-pairs. Such sources of information include alignment to a reference genome (Bambus...
2871 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphica...for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (plasto...
2871 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to...the post-treatment depends on the availability of a reference genome/transcr...
2871 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo ass...lization and quality assessment of de novo genome assemblies Citation This so...lization and quality assessment of de novo genome assembl...
2863 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira.... 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology...
2862 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of...approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...rediction of initial exons in most cases. http://genome.crg.es/...
2861 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on...rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...aset. It is especially useful for newly sequenced genomes that h...
2857 days ago
