Results for "Genome Sequence"
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Hagfish - assess an assembly through creative use of coverage plots
...plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome re-sequencing experiment. Hagfish requires a reference sequence and a paired end re...2958 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...rd-generation sequencing reads to a reference genome. Uniquely among current mappi...nologies, low-coverage and exome) in the 1000 Genomes Project. To provide highly a...provides explicit support for handling known-sequence SVs, e.g. mobile element inse...2958 days ago
- ...ping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most wo...hip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the ref...
2958 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.u...2957 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. T...resource was established to better understand how sequence variation may affect function...
2945 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. Th...tion data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome b...
2944 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...ge plots (TAGC plots) to visualise the contents of genome a...
2934 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAE...sembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is represented by those pieces....
2934 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often un...
2933 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome s...2217 days ago
