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SLURM workload manager software, a free open-source workload manager designed specifically to satisfy the demanding needs of high performance computing. This page is a HOWTO guide for setting up a SLURM inst...2980 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cleaning your data in this way...
2971 days ago
- ...vel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from...a Y, Fujiyama A, Hayashi T, Itoh T, “Efficient de novo assembly of highly heterozygous genomes from...
2971 days ago
- ...he evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient tha...
2971 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the pa..., since it will automatically detect ambiguous mappings. Satsuma has pa...K. (2010). Genome-wide synteny through highly sensitive sequence alignme...2971 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2961 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the m..., Ion Torrent and Pacific BioSciences SMRT. Indeed, MOSAIK was the only aligner to provide consistent mapp...2963 days ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
2962 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released...2962 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/golden...2962 days ago
