FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools...1187 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports inpu...736 days ago
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ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
ReConPlot (REarrangement and COpy Number PLOT), an R package that provides function...d on the popular ggplot2 package, thus allowing customization of plots and the generation of publication-quality figure...166 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...enomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run t...tion trivial and results highly reproducible. The Nextflow DSL2 implementation of thi...98 days ago