Results for "Sequence Analysis"
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Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more ac...and other marker genes. Highly accurate OTU sequences and improved diversity measu...2913 days ago
- Microbiome analysis using a single application MEGAN6...d in one application. Taxonomic analysis using the NCBI taxonomy or a...taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ns of sequencing reads. Blast-like analysis can be performed using DIAMON...
2893 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitabl...d Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis...
2679 days ago
- KisSplice is a software that enables to analyse RNA-seq dat...l possible post-treatments meant to facilitate the analysis of the results. The choice of...criptome and on the need to perform a differential analysis, as summarised in the followi...
2871 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1278 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two...thods for identifying repeat element boundaries and family relationships from sequence...
2869 days ago
- ...ver, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousan...nd improving the quality of such assemblies is critical for subsequent analysis. Visualization and qua...
2863 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of dif...GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequence...
2861 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of...and display basepairs in colour and to also visualize corresponding multiple sequence...
2855 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order and orient the i...2847 days ago
