Results for "Sequence analysis."
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Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more ac...and other marker genes. Highly accurate OTU sequences and improved diversity measur...2902 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one...
2882 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are...
2668 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNP...
2860 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1267 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two...thods for identifying repeat element boundaries and family relationships from sequence...
2858 days ago
- ...er, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousan...d improving the quality of such assemblies is critical for subsequent analysis. Visualization and qual...
2852 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of di...railEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequences...
2850 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of...and display basepairs in colour and to also visualize corresponding multiple sequence...
2844 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order and orient the in...2836 days ago
