2132 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trad...g read and uses this to correct errors in these reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 an...2126 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focus...ined in four ways: drawing from a log-normal distribution (typical for genomic DNA), sampling from an existing F...2124 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific...2124 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for...era. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteom...e comparisons using BLAST and graphical analyses of DNA structures. Paper:&nbs...2124 days ago
2074 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally i...2061 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al....t is a very fast search algorithm that is used to separately search protein or DNA databases. BLAST is best used...2014 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and...-made tabular files. Features Linear representation of several segments of DNA Comparisons represented by a...2012 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequenci...2004 days ago