2210 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology m...s using long sequencing reads", Hunt et al, Genome Biology 2015 Dec 29;16(1):294. doi: 1...2210 days ago
CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of cir...uitable for the web. Feature information and rendering...complete with labels, a title, legends, and foot...ee the CGView gallery. http://wishart.biology.ualberta.ca/cgview/gallery.ht...2174 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV c...long-read sequencing data. NextSV integrates three aligners and three...sers can easily perform downstream annotation using ANNOVAR and dis...2127 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide...ants (SNVs) by somatic status and clonality. PureCN is designed...on and copy number pipelines, and has suppo....” Source Code for Biology and Medicine, 11, 13. do...2124 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hyb...long read sequencing using the BWT and FM-index of short-read sequencing data....data, FMLRC will build an FM-index and use...frequency k-mers in the long read and repla...gh low complexity regions that are computa...2123 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for compa...it possible to transfer the programs to other systems...We here demonstrate the package by comparing and analy...nalyses include 16S rRNA phylogeny, basic DNA and cod...2110 days ago
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Biotite: A general framework for computational biology
...the beginners in programming and computationally efficient because...f the implementation of Numpy and Cython. Biotite consists of four s...r databases such as RCSB PDB, and application provides interfac...kage bundles popular tasks in computational biology into an unifying framework, w...1994 days ago