Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The inf...e refer user manual or other information resources on web for more details. FASTA FASTQ SAM BAM VCF GFF G...2374 days ago
Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as desc...nces of rare, uncultured bacteria obtained by differential coverage binning of multi...2365 days ago
xmatchview: smith-waterman alignment visualization
xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and...2364 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distrib...ned from any in silico and in vitro techniques, supporting multi...2364 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome stru...ble parameter settings for a wide discipline of users, especially can simulate multi...2344 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite....rithms, including: Reading a pre-existing reference genome from one or more FASTA files. Alternatively, genera...2358 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third gen...of sequences: the de Bruijn graph should appear in fasta format with 1 entry per node,...e format:>NODE the set of sequences should be in fasta or fastq format. These sequen...2026 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioT...roovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in multi...2356 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feat...2351 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It w...nd gzip compression support. Built-in non-blocking I/O web server, supporting multi...2349 days ago