DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
...ct amplicon sequence variants (ASVs) present in each sample. The DADA2 Workflow on Big Data goes through workflow optimized to run on large datasets (10s of mil...1295 days ago
1231 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
..., and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST...1226 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
...;under bin/ directory compiled using g++ v4.8.5 and linked with libz v1.2.7 for Linux x86_64 system. If you could not run it (which is usually caused b...1202 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
...ualization, handling failures, command line integration, and much more. Run pip install luigi to install...om PyPI. Documentation for the latest release is hosted on readthedocs. Run pip install luigi[toml] to in...1069 days ago
984 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
..., and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST...965 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
...each of the instruments available. If you’re new to high-throughput sequencing and have questions about how you should design your sequencing run, fill out our free consu...714 days ago
630 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...genomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute...97 days ago